Hi all im going thought the same situation right now!
Not to hijack your thread here Gazza,
now i do have 2 looms to play with. one is a genuine Yamaha 3RM the other is a unknown.
the genuine one i have no problems with. but the other one i have has the same issue as you Gazza, if bypass the Kill and Side stand Switch with a loop and i then bridge all the pins on the ignition block then i get no spark, however if i then remove the pins from red and brown. the spark returns.
now the switches work by bridging the connections to red and brown and B/w to B/y respectivly.
like i said i have a genuine 3RM loom to and that is fine so i know the components are absoulutly fine. and the bike runs
its just with this unknown loom that i have an issue with. @gazza76 im curious to know did you get this loom from ebay a 3rd party made aftermarket one?